Training materials
-
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
CLIP-Seq data analysis from pre-processing to motif detection
• beginnerTranscriptomics -
e-learning
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse -
e-learning
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq -
e-learning
Metabarcoding/eDNA through Obitools
• beginnerEcology Community composition EBV class EBV dataset EBV workflow Genetic composition EBV class Metabarcoding eDNA -
e-learning
A short introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses español -
slides
Introduction to CRISPR screen analysis
• beginnerGenome Annotation -
slides
ChIP-seq data analysis
• beginnerEpigenomics Epigenetics