Training materials
Related resources: Associated Workflows
and Difficulty level: Beginner
and Contributors: Saskia Hiltemann
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e-learning
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
e-learning
Creating a new tutorial
• beginnerContributing to the Galaxy Training Material -
e-learning
Introduction to Image Analysis using Galaxy
• beginnerImaging HeLa -
e-learning
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
e-learning
Galaxy Basics for everyone
• beginnerIntroduction to Galaxy Analyses -
slides
Circos
• beginnerVisualisation -
slides
A Short Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses
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