e-learning

Introduction to Image Analysis using Galaxy

Abstract

Image analysis is the extraction of meaningful information from images by means of digital image processing techniques. Imaging is an important component in a wide range of scientific fields of study, such as astronomy, medicine, physics, biology, geography, chemistry, robotics, and industrial manufacturing.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • How do I use Galaxy with imaging data?
  • How do I convert images using Galaxy?
  • How do I display images in Galaxy?
  • How do I filter images in Galaxy?
  • How do I segment simple images in Galaxy?

Learning Objectives

  • How to handle images in Galaxy.
  • How to perform basic image processing in Galaxy.

Licence: Creative Commons Attribution 4.0 International

Keywords: HeLa, Imaging

Target audience: Students

Resource type: e-learning

Version: 13

Status: Active

Prerequisites:

  • FAIR Bioimage Metadata
  • Introduction to Galaxy Analyses
  • REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data

Learning objectives:

  • How to handle images in Galaxy.
  • How to perform basic image processing in Galaxy.

Date modified: 2024-11-06

Date published: 2019-08-13

Authors: Leonid Kostrykin, Saskia Hiltemann, Thomas Wollmann

Contributors: Saskia Hiltemann, Thomas Wollmann

Scientific topics: Imaging


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