Training materials
Related resources: Associated Training Datasets
and Difficulty level: Beginner
and Contributors: Saskia Hiltemann
13 materials found
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e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
e-learning
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
e-learning
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
e-learning
Introduction to Image Analysis using Galaxy
• beginnerImaging HeLa -
e-learning
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
e-learning
Galaxy Basics for everyone
• beginnerIntroduction to Galaxy Analyses
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