TeSS (Training eSupport System)

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- Scientific topic
- Data management172
- Metadata management172
- Research data management (RDM)172
- Comparative transcriptomics148
- Transcriptome148
- Transcriptomics148
- R142
- R program142
- R script142
- FAIR data103
- Findable, accessible, interoperable, reusable data103
- Genome annotation99
- Algorithms97
- Computer programming97
- Data structures97
- Programming languages97
- Software development97
- Software engineering97
- Exomes96
- Genomes96
- Genomics96
- Personal genomics96
- Synthetic genomics96
- Viral genomics96
- Whole genomes96
- MicroRNA sequencing94
- RNA sequencing94
- RNA-Seq94
- RNA-Seq analysis94
- Small RNA sequencing94
- Small RNA-Seq94
- Small-Seq94
- Transcriptome profiling94
- WTSS94
- Whole transcriptome shotgun sequencing94
- miRNA-seq94
- Bayesian methods93
- Biostatistics93
- Descriptive statistics93
- Gaussian processes93
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- Markov processes93
- Multivariate statistics93
- Probabilistic graphical model93
- Probability93
- Statistics93
- Statistics and probability93
- Chromosome walking71
- Clone verification71
- DNA-Seq71
- DNase-Seq71
- High throughput sequencing71
- High-throughput sequencing71
- NGS71
- NGS data analysis71
- Next gen sequencing71
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- Panels71
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- Active learning66
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- Kernel methods66
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- Neural networks66
- Python66
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- Recommender system66
- Reinforcement learning66
- Supervised learning66
- Unsupervised learning66
- py66
- Metagenomics62
- Shotgun metagenomics62
- Bottom-up proteomics61
- Discovery proteomics61
- MS-based targeted proteomics61
- MS-based untargeted proteomics61
- Metaproteomics61
- Peptide identification61
- Protein and peptide identification61
- Proteomics61
- Quantitative proteomics61
- Targeted proteomics61
- Top-down proteomics61
- Bioinformatics49
- Data rendering48
- Data visualisation48
- Single-cell genomics48
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- Antimicrobial stewardship39
- Biological sequences39
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- Operation
- Data handling48
- File handling48
- File processing48
- Processing48
- Report handling48
- Utility operation48
- Data analysis13
- Mathematical modelling11
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- Data extraction10
- Data retrieval10
- Data retrieval (metadata)10
- Metadata retrieval10
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- Data visualisation9
- Molecular visualisation9
- Plotting9
- Rendering9
- Visualisation9
- Database retrieval7
- Query7
- Query and retrieval7
- Database search4
- Normalisation4
- Search4
- Standardisation4
- Standardisation and normalisation4
- Data brokering3
- Data deposition3
- Data deposition brokering3
- Data submission3
- Database deposition3
- Database submission3
- Annotation2
- Data formatting2
- Data management planning2
- Data reformatting2
- Design2
- File format conversion2
- File formatting2
- File reformatting2
- Format conversion2
- RNA-Seq analysis2
- Alignment1
- Alignment construction1
- Alignment generation1
- Allele calling1
- Biological network analysis1
- Biological network modelling1
- Biological network prediction1
- Classification1
- Comparison1
- Exome variant detection1
- Expression analysis1
- Expression data analysis1
- Functional genome annotation1
- Gene expression analysis1
- Gene expression data analysis1
- Gene expression regulation analysis1
- Genome annotation1
- Genome variant detection1
- Germ line variant calling1
- Image analysis1
- Metagenome annotation1
- Metagenomic inference1
- Microarray data analysis1
- Multiple alignment1
- Multiple sequence alignment1
- Mutation detection1
- Network analysis1
- Network comparison1
- Network modelling1
- Network prediction1
- Network simulation1
- Network topology simulation1
- Ontology browsing1
- Ontology visualisation1
- Protein expression analysis1
- Protein secondary structure visualisation1
- Quality control1
- RNA secondary structure visualisation1
- Read pre-processing1
- Sequence classification1
- Sequence read pre-processing1
- Somatic variant calling1
- Structural genome annotation1
- Structure rendering1
- Structure visualisation1
- Validation1
- Variant calling1
- Variant mapping1
- de novo mutation detection1
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- Tool
- Galaxy295
- FastQC34
- SAMtools28
- Bioconductor23
- REDCap20
- BWA19
- MultiQC18
- BEDTools17
- fastp17
- Data Stewardship Wizard16
- scikit-learn15
- SCANPY14
- Cutadapt13
- DeepTools13
- JBrowse13
- QUAST11
- GEMINI10
- RStudio10
- NanoPlot9
- taxonomy_krona_chart9
- BLAST8
- BUSCO8
- RDMkit8
- STAR8
- Trimmomatic8
- kraken28
- FreeBayes7
- Ontology Lookup Service7
- seqtk7
- BCFtools6
- Bandage6
- MaxQuant6
- Open Babel6
- Workflow4Metabolomics6
- ggplot26
- msConvert6
- BamTools5
- Biopython5
- Bowtie 25
- COPASI5
- European Nucleotide Archive (ENA)5
- FASTX-Toolkit5
- Flye5
- Galactic Circos5
- HISAT25
- MSstats5
- MetaPhlAn5
- Minimap25
- RSeQC5
- Unicycler5
- xcms5
- BridgeDb4
- Chipster4
- Diamond4
- HUMAnN24
- KrakenTools4
- MACS4
- MAFFT4
- Merqury4
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
- Newick Utilities4
- The Protein Data Bank (PDB)4
- UniProt4
- annotatemyids4
- gffread4
- mothur4
- snpEff4
- Apollo3
- Bracken3
- BridgeDbR3
- Bwa-mem23
- Cardinal3
- CellProfiler3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- GOseq3
- Galaxy Image Analysis3
- GenomeScope 2.03
- GraPhlAn3
- InterMine3
- InterMineR3
- InterProScan (EBI)3
- MGnify (was EBI Metagenomics)3
- OMERO3
- QualiMap3
- RDKit3
- Salmon3
- SeqCode3
- SortMeRNA3
- Stacks3
- Unipept3
- Zooma3
- bx-python3
- compute_sequence_length3
- export2graphlan3
- gfastats3
- gffcompare3
- humann3
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- Standard database or policy
- FAIRsharing5
- NCBI Gene4
- European Nucleotide Archive3
- RDA DMP Common Standard for Machine-Actionable Data Management Plans3
- DisProt2
- Ensembl2
- Minimum Information about Plant Phenotyping Experiment2
- OBO Foundry2
- Ontology Lookup Service2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- eNanoMapper Ontology2
- Wheat Data Interoperability Guidelines 1
- BRENDA1
- Bioschemas1
- BridgeDb1
- Chemical Entities of Biological Interest1
- Common Workflow Language1
- Crop Ontology1
- FAIR sharing1
- FAIRtracks1
- Gene3D1
- Genomics England | PanelApp1
- HumanMine1
- IUPAC International Chemical Identifier1
- Identifiers.org Registry1
- Integrated resource of protein families, domains and functional sites1
- MDL molfile Format1
- Multi-Crop Passport Descriptors1
- OMOP Common Data Model1
- Observational Medical Outcomes Partnership Standard Vocabulary1
- PRINTS1
- Plant Phenotype Experiment Ontology1
- Resource Identification Portal 1
- SUPERFAMILY1
- Schema.org1
- Simplified Molecular Input Line Entry Specification Format1
- Stress Knowledge Map1
- Structural Classification Of Proteins1
- The FAIR Principles1
- The Human Metabolome Database1
- Wheat Trait Ontology1
- Wikidata1
- data.eNanoMapper.net1
- i2b2-patient_visit_dimensions1
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- Content provider
- GTN679
- Glittr.org663
- European Bioinformatics Institute (EBI)412
- GOBLET108
- SIB Swiss Institute of Bioinformatics92
- ELXIR-UK DaSH70
- Software Carpentry70
- Australian BioCommons55
- DTLS - Dutch Techcentre For Life Sciences41
- de.NBI35
- Bioinformatics and Biomathematics Training Hub34
- Khan Academy Statistics32
- BY-COVID31
- IFB French Institute of Bioinformatics27
- VIB Training26
- Bioconductor24
- Coursera18
- ELIXIR Portugal18
- CINECA PROJECT17
- ELIXIR13
- PerMedCoE12
- NBIS11
- CSC - IT Center for Science10
- eNanoMapper10
- Bioschemas9
- Data Carpentry9
- NanoCommons9
- Barcelona Supercomputing Center (BSC)8
- Department of Bioinformatics - BiGCaT, Maastricht University8
- Genome 3D8
- ELIXIR Estonia7
- ELIXIR Norway7
- InterMine7
- Data Steward team Ghent University6
- ELIXIR Luxembourg6
- ELIXIR-SI eLearning Platform (EeLP)6
- BioData.pt5
- ELIXIR Slovenia5
- LIPID MAPS5
- UNIVERSE-HPC project5
- COG-Train4
- Centre for Genomic Regulation (CRG)4
- Proteomics Academy4
- University of Cambridge Bioinformatics Training4
- Danish National Health Data Science Sandbox3
- ELIXIR: The Czech Republic Node3
- Novo Nordisk Foundation Center for Protein Research3
- VHP4Safety3
- ELIXIR AAI2
- Software Sustainability Institute2
- The Carpentries2
- University of Edinburgh2
- Biomedical Sciences Research Center "Alexander Fleming"1
- Centre for Digital Life Norway1
- Cloud-SPAN1
- EOSC4Cancer1
- ExCALIBUR1
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- proteomicsML1
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- Keyword
- R286
- Python124
- Transcriptomics122
- RNA-seq85
- Genomics80
- Bioinformatics74
- Data management67
- Galaxy Server administration65
- Next generation sequencing65
- Statistics63
- FAIR61
- Machine learning57
- Data science53
- FAIR data53
- Foundations of Data Science50
- data management50
- Single-cell sequencing48
- Reproducibility47
- Proteomics46
- jupyter-notebook46
- Workflows42
- Unix/Linux40
- Data visualization39
- Single Cell37
- microgalaxy36
- General33
- training33
- Variant analysis29
- Version control29
- Development in Galaxy27
- Rare Diseases & Research27
- Contributing to the Galaxy Training Material26
- Data analysis26
- Genome Annotation26
- Metagenomics26
- Assembly25
- RDM25
- Using Galaxy and Managing your Data25
- Epigenetics24
- Ecology22
- Statistics and machine learning22
- data stewardship22
- ansible21
- Containerization20
- Shiny20
- sensitive data19
- Docker19
- FAIR Data, Workflows, and Research19
- Microbiome19
- Nextflow19
- REDCap19
- git-gat19
- interactive-tools19
- life-sciences19
- metadata19
- metagenomics19
- ChIP-seq18
- Cloud computing18
- Programming18
- Metadata17
- Teaching and Hosting Galaxy training17
- Variant Analysis17
- 10x16
- Roslin Institute16
- Shell16
- Climate15
- Metabolomics15
- Sequence analysis15
- fair15
- prokaryote15
- Introduction to Galaxy Analyses14
- Julia14
- gmod14
- jbrowse114
- Data management planning13
- Babraham Institute13
- EeLP13
- Europe PMC13
- Git13
- High performance computing13
- NGS13
- Ontologies13
- eLearning13
- earth-system13
- Clinical data12
- ELIXIR-CONVERGE12
- HPC12
- Literature search12
- Phylogenetics12
- Quarto12
- Spatial transcriptomics12
- Standards12
- bioinformatics12
- covid1912
- cyoa12
- health-informatics12
- paper-replication12
- ATAC-seq11
- CONVERGE11
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- Difficulty level
- Not specified1932
- Beginner777
- Intermediate196
- Advanced37
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- Licence
- License Not Specified1629
- Creative Commons Attribution 4.0 International893
- Creative Commons Attribution Share Alike 4.0 International129
- MIT License81
- Creative Commons Attribution Non Commercial Share Alike 4.0 International33
- Creative Commons Zero v1.0 Universal33
- GNU General Public License v3.0 only32
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International23
- Apache License 2.017
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- Other (Non-Commercial)14
- BSD 3-Clause "New" or "Revised" License12
- Creative Commons Attribution Non Commercial 4.0 International9
- Creative Commons Attribution 1.0 Generic5
- Artistic License 2.02
- Creative Commons Attribution No Derivatives 4.0 International2
- GNU Affero General Public License v3.0 only2
- GNU General Public License v2.0 only2
- Academic Free License v3.01
- Creative Commons Attribution 2.0 Generic1
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- Do What The F*ck You Want To Public License1
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- Target audience
- Students463
- Researchers211
- Biologists, Genomicists, Computer Scientists170
- Post-Doctoral Fellows164
- PhD students139
- Clinicians109
- Galaxy Administrators92
- Graduate students87
- Graduate Students79
- Instructors47
- Novice44
- Life Science Researchers43
- Biologists41
- bioinformaticians35
- Bioinformaticians26
- Intermediate26
- PhD candidate26
- PhD candidates21
- post-docs20
- Scientists19
- Bench biologists18
- Data Managers18
- Academia/ Research Institution17
- Industry17
- Non-Profit Organisation17
- Beginners16
- Data Scientists16
- Trainers16
- life scientists16
- Healthcare15
- beginner bioinformaticians15
- Research Scientists12
- Biomedical Researchers11
- Computational biologists11
- Researcher in life sciences11
- data stewards11
- software developers, bioinformaticians11
- health professionals10
- Master students10
- biocurators10
- Biomedical researchers9
- PhD Students9
- Training Designers9
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- healthcare professionals9
- PhD8
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- modelers7
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- Life scientists6
- Patient Advocates 6
- rare disease patients representatives5
- Chemists5
- Clinical Scientists5
- General Interest5
- Post Docs5
- Researcher5
- Undergraduate students5
- computational scientists5
- data managers5
- plant researchers5
- postgrad5
- project manager5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Beginner4
- Curators4
- Data stewards4
- Laboratory technicians4
- PI4
- Veterinarians4
- postdocs4
- postdoctoral researchers4
- researchers4
- Biologists with little or no prior computational experience3
- Database users3
- Life scientists with programming skills3
- Ontologists3
- Postgraduate students3
- Technicians3
- data steward / data manager3
- geneticists3
- medical students3
- postdoc3
- programmers3
- research software engineers and researchers writing code3
- software engineers3
- teachers3
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities2
- Beginner informatics2
- General Physicians2
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
- Postdocs and Staff members2
- Principal Investigators (PIs)2
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- Author
- Helena Rasche125
- Bérénice Batut93
- SIB Swiss Institute of Bioinformatics73
- Saskia Hiltemann61
- carpentries-incubator46
- Björn Grüning44
- Simon Gladman33
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- The Gulbenkian Training Programme in Bioinformatics27
- bebatut27
- Nicola Soranzo25
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- Saskia Lawson-Tovey24
- The Carpentries23
- Michelle Brazas21
- Yvan Le Bras21
- Fotis E. Psomopoulos20
- NBIS - National Bioinformatics Infrastructure Sweden20
- Wendi Bacon20
- posit-conf-202320
- Egon Willighagen19
- Katarzyna Kamieniecka19
- Subina Mehta19
- Bazante Sanders18
- Krzysztof Poterlowicz18
- Laura Cooper18
- Terri Attwood18
- UC Davis Bioinformatics Core Training Page18
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- Marie Josse17
- Mehmet Tekman17
- Teaching materials at the Harvard Chan Bioinformatics Core17
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- Data Carpentry16
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- Martin Morgan15
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- bioinformatics.ca14
- CRUK CI Bioinformatics Core13
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- Personalized Health Informatics Group12
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- Canadian Bioinformatics Workshops10
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- Martin Čech10
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- Samaha, Georgina (orcid: 0000-0003-0419-1476)10
- Wandrille Duchemin10
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- Anika Erxleben9
- Anup Kumar9
- David Wishart9
- Fred Hutch Data Science Lab9
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- Maria Levchenko8
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- Sara Morsy8
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- Timothy J. Griffin8
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- Contributor
- Saskia Hiltemann509
- Helena Rasche496
- Björn Grüning347
- Bérénice Batut230
- Nicola Soranzo167
- Cristóbal Gallardo103
- Anthony Bretaudeau99
- Niall Beard89
- Martin Čech82
- Nate Coraor71
- Gildas Le Corguillé62
- Marius van den Beek60
- Wendi Bacon59
- William Durand58
- Robert Andrews55
- Simon Gladman54
- Mehmet Tekman46
- carpentries-incubator46
- Lucille Delisle44
- Munazah Andrabi43
- Melanie Föll35
- Yvan Le Bras35
- Beatriz Serrano-Solano30
- Pavankumar Videm29
- SIB Swiss Institute of Bioinformatics28
- Simon Bray28
- Teresa Müller28
- Wolfgang Maier25
- Donny Vrins24
- Subina Mehta24
- Anne Fouilloux23
- Maria Doyle23
- Peter van Heusden23
- Julia Jakiela20
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- Bazante Sanders19
- Anton Nekrutenko18
- UC Davis Bioinformatics Core Training Page18
- Anup Kumar17
- Teaching materials at the Harvard Chan Bioinformatics Core17
- posit::conf(2024)17
- Data Carpentry16
- Khaled Jum'ah16
- Deepti Varshney15
- Mélanie Petera14
- bioinformatics.ca14
- CRUK CI Bioinformatics Core13
- Marie Josse13
- Matthias Bernt13
- Pablo Moreno12
- Dave Clements11
- David López11
- Delphine Lariviere11
- Gianmauro Cuccuru11
- Mira Kuntz11
- Stéphanie Robin11
- Canadian Bioinformatics Workshops10
- Instituto Gulbenkian de Ciência10
- John Chilton10
- Marisa Loach10
- The Gulbenkian Training Programme in Bioinformatics10
- @posit-pbc9
- Fred Hutch Data Science Lab9
- Katarzyna Kamieniecka9
- Mallory Freeberg9
- rstudio::conf(2022)9
- Eija Korpelainen8
- Elin Kronander8
- Kaivan Kamali8
- Melissa Burke8
- Paul Zierep8
- Pratik Jagtap8
- Sabine Österle8
- Sundeep Agarwal8
- Tomas Klingström8
- Wolmar Nyberg Åkerström8
- Alexandre Cormier7
- Allyson Lister7
- Anna Syme7
- AstraZeneca7
- Bioinformatics, Rockefeller University7
- Christopher Barnett7
- Daniel Sobral7
- Hans-Rudolf Hotz7
- Markus Englund7
- Mattias Strömberg7
- Niclas Jareborg7
- Sergio Martínez Cuesta7
- Stephan Nylinder7
- Yvonne Kallberg7
- Bert Droesbeke6
- Biocore@CRG6
- Catherine Bromhead6
- Clemens Blank6
- Ekaterina Polkh6
- Enis Afgan6
- Erik Hedman6
- Florian Christoph Sigloch6
- Florian Heyl6
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- Resource type
- e-learning616
- Recorded webinar242
- slides139
- Video116
- Tutorial107
- Training materials51
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- Slidedeck31
- Presentation30
- lessons29
- Documentation28
- hands-on tutorial28
- course materials25
- video24
- Scripts18
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- Handout17
- PDF9
- E-learning8
- Online material5
- Talk5
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- Bioinformatics4
- E-Learning4
- FREE online course4
- podcast4
- Jupyter notebook3
- Life Sciences Literature Database3
- Mock data3
- online course3
- online modules3
- youtube video3
- API reference2
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- Education2
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- scripts2
- slideck/ presentation2
- tutorial2
- tutorials2
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- E-learning + workshop1
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- additional reading1
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- hackathon1
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- implementation guidelines1
- knowledgebase1
- slide deck / presentation1
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- Related resource
- Associated Training Datasets272
- Associated Workflows257
- Jupyter Notebook (with Solutions)42
- Jupyter Notebook (without Solutions)42
- Input datasets32
- Research Data Management in Life Sciences11
- Associated slides9
- The Carpentries7
- Quarto/RMarkdown Notebook6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Variant Analysis dataset4
- Assembly slides3
- DMPonline3
- Data Stewardship Wizard3
- Development in Galaxy slides3
- Slides3
- Workshop recording3
- ChIP-Seq data analysis dataset2
- DisProt2
- Epigenetics dataset2
- Genome Annotation dataset2
- Metagenomics dataset2
- Sequence analysis slides2
- ARROWSMITH1
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- COBRA Toolbox1
- CanCOGeN1
- Contributing to the Galaxy Training Material slides1
- DMPortal1
- Data Visualisation (theory) 1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
- ELIXIR's Impact Toolkit1
- ENA1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- FAIRplus FAIRification wizard1
- GEEM1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Galaxy Server administration slides1
- Galaxy project guided tours1
- Genome Annotation slides1
- Genomics England PanelApp1
- GitHub1
- HoloFood Project1
- Introduction to Galaxy Analyses dataset1
- Introduction to Galaxy dataset1
- Introduction to the EGA and sharing sensitive data1
- MGnify1
- MetaboLights1
- MobiDB1
- Next generation biobanking ontology (NGBO)1
- OpenRefine1
- Public Health Alliance for Genomic Epidemiology1
- R basics1
- RDMkit1
- REPET image Docker1
- Ready For BioData Management?1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- Statistics dataset1
- Transcriptomics slides1
- User Interface and Features dataset1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
- Video Walkthrough of the Poster1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
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Training materials

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Training materials

Introduction to Statistical Modelling

Introduction to Mixed Models

Introduction to Analysing Repeated Measures Data

An Introduction to Mathematical Modelling

Quality Control in Sequencing Experiments

Viewing 3D Structures with Deep View

Extracting biological information from gene lists

Analysing bisulfite methylation sequencing data

RNA-Seq Analysis

Sample size estimation