Materials - TeSS (Training eSupport System)

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- Scientific topic
- Genomics
- Data management171
- Metadata management171
- Research data management (RDM)171
- Comparative transcriptomics148
- Transcriptome148
- Transcriptomics148
- R142
- R program142
- R script142
- FAIR data102
- Findable, accessible, interoperable, reusable data102
- Genome annotation99
- Algorithms97
- Computer programming97
- Data structures97
- Programming languages97
- Software development97
- Software engineering97
- Exomes96
- Genomes96
- Personal genomics96
- Synthetic genomics96
- Viral genomics96
- Whole genomes96
- MicroRNA sequencing94
- RNA sequencing94
- RNA-Seq94
- RNA-Seq analysis94
- Small RNA sequencing94
- Small RNA-Seq94
- Small-Seq94
- Transcriptome profiling94
- WTSS94
- Whole transcriptome shotgun sequencing94
- miRNA-seq94
- Bayesian methods93
- Biostatistics93
- Descriptive statistics93
- Gaussian processes93
- Inferential statistics93
- Markov processes93
- Multivariate statistics93
- Probabilistic graphical model93
- Probability93
- Statistics93
- Statistics and probability93
- Chromosome walking71
- Clone verification71
- DNA-Seq71
- DNase-Seq71
- High throughput sequencing71
- High-throughput sequencing71
- NGS71
- NGS data analysis71
- Next gen sequencing71
- Next generation sequencing71
- Panels71
- Primer walking71
- Sanger sequencing71
- Sequencing71
- Targeted next-generation sequencing panels71
- Active learning66
- Ensembl learning66
- Kernel methods66
- Knowledge representation66
- Machine learning66
- Neural networks66
- Python66
- Python program66
- Python script66
- Recommender system66
- Reinforcement learning66
- Supervised learning66
- Unsupervised learning66
- py66
- Metagenomics62
- Shotgun metagenomics62
- Bottom-up proteomics61
- Discovery proteomics61
- MS-based targeted proteomics61
- MS-based untargeted proteomics61
- Metaproteomics61
- Peptide identification61
- Protein and peptide identification61
- Proteomics61
- Quantitative proteomics61
- Targeted proteomics61
- Top-down proteomics61
- Bioinformatics49
- Data rendering48
- Data visualisation48
- Single-cell genomics48
- Single-cell sequencing48
- Antimicrobial stewardship39
- Biological sequences39
- Medical microbiology39
- Microbial genetics39
- Microbial physiology39
- Microbial surveillance39
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- Operation
- Data handling1
- Database retrieval1
- File handling1
- File processing1
- Functional genome annotation1
- Genome annotation1
- Metagenome annotation1
- Processing1
- Query1
- Query and retrieval1
- Report handling1
- Sequence classification1
- Structural genome annotation1
- Utility operation1
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- Tool
- BridgeDb1
- Data Stewardship Wizard1
- PASTEClassifier1
- RDMkit1
- REPET1
- REXdb1
- SRA1
- ViralZone1
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- Standard database or policy
- European Nucleotide Archive1
- FAIRsharing1
- Genomics England | PanelApp1
- RDA DMP Common Standard for Machine-Actionable Data Management Plans1
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- Content provider
- Glittr.org52
- GTN17
- European Bioinformatics Institute (EBI)10
- Centre for Genomic Regulation (CRG)2
- ELIXIR Norway2
- ELIXIR Slovenia2
- Cloud-SPAN1
- Department of Bioinformatics - BiGCaT, Maastricht University1
- ELIXIR-SI eLearning Platform (EeLP)1
- EOSC4Cancer1
- IFB French Institute of Bioinformatics1
- SIB Swiss Institute of Bioinformatics1
- VHP4Safety1
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- Keyword
- Genomics59
- Next generation sequencing23
- microgalaxy17
- Variant analysis16
- R14
- RNA-seq10
- Unix/Linux10
- prokaryote10
- Transcriptomics9
- General8
- ATAC-seq6
- ChIP-seq6
- Data visualization6
- Epigenetics6
- Genome Annotation6
- Single-cell sequencing6
- gmod6
- jbrowse16
- Metagenomics5
- Statistics5
- illumina5
- Assembly4
- Cloud computing4
- EeLP4
- Genome assembly4
- Version control4
- bacteria4
- eLearning4
- one-health4
- Comparative genomics3
- Data management3
- Epidemiology3
- Galaxy3
- Genome annotation3
- Long read sequencing3
- Reproducibility3
- Variant Analysis3
- bioinformatics3
- Command line2
- Data analysis2
- Data science2
- Docker2
- Evolution2
- FAIR data2
- FEGA2
- Federated EGA2
- HPC2
- High performance computing2
- Multiomics2
- Python2
- Shell2
- Snakemake2
- amr2
- assembly2
- evolution2
- genomics2
- RNA-Seq1
- API1
- Amazon Web Services1
- Annotation1
- Biocuration1
- Bioinformatics1
- BridgeDb1
- CWL1
- Containerization1
- Data Analysis1
- Data Life Cycle1
- Data Management Plan1
- Data Steward1
- Data Stewardship Wizard1
- Data management planning1
- Designing functional genomics experiments1
- ELIXIR Converge1
- ELIXIR RIR, BridgeDb1
- ELIXIR-CONVERGE1
- Ecology1
- Enrichment analysis1
- Gene lists1
- Genome sequencing1
- Gramene database1
- Identifiers1
- Introduction1
- Julia1
- Machine learning1
- Marine Metagenomics1
- Metabolomics1
- Microbiology1
- Nextflow1
- Oncology1
- Perl1
- Pipelines1
- Programmatic access1
- Proteomics1
- Research Data Management1
- Research Infrastructure1
- Rmarkdown1
- Sequence alignments1
- Sequence analysis1
- Singularity1
- Spatial omics1
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- Difficulty level
- Not specified70
- Beginner23
- Intermediate3
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- Licence
- License Not Specified55
- Creative Commons Attribution 4.0 International24
- MIT License6
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International5
- GNU General Public License v3.0 only4
- Creative Commons Zero v1.0 Universal2
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- Target audience
- Students19
- Researchers6
- Clinicians5
- PhD students5
- Biologists4
- Bioinformatician2
- Bioinformaticians2
- Clinical Scientists2
- Graduate students2
- Life Science Researchers2
- PhD Students2
- life scientists2
- Bioinformatician, Bioanalysts1
- Biologists, Genomicists, Computer Scientists1
- Data Access Committeses from the EGA1
- Data Managers1
- Data Scientists1
- Data stewards1
- Life Scientists1
- Master students1
- Microbiologists1
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members1
- PhD candidates1
- PhD students in Genomics datascience1
- Post Docs1
- Post docs1
- Postgraduate students1
- Principal Investigators1
- Principal Investigators (PIs)1
- Professors1
- Public Health Professionals1
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA1
- Researchers and bioinformaticians involved in the VEIS project1
- Scientists1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- beginner bioinformaticians1
- clinicians and informaticians interested in cancer genetics1
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- Author
- Bérénice Batut7
- Data Carpentry6
- Anton Nekrutenko4
- Simon Gladman4
- Bazante Sanders3
- Canadian Bioinformatics Workshops3
- Delphine Lariviere3
- NBIS - National Bioinformatics Infrastructure Sweden3
- Anna Syme2
- Annabel Cansdale2
- Bioinformatics, Rockefeller University2
- Christoph Stritt2
- Daniela Brites2
- Emma Rand2
- Evelyn Greeves2
- Galo A. Goig2
- Helena Rasche2
- Instituto Gulbenkian de Ciência2
- Jorge Buenabad-Chavez2
- Sarah Forrester2
- The Carpentries Lab2
- The Gulbenkian Training Programme in Bioinformatics2
- Torsten Seemann2
- @LieberInstitute1
- @formbio1
- Alex Ostrovsky1
- Alli Black1
- Andries Marees1
- Anthony Bretaudeau1
- Applied Genomics1
- CRUK CI Bioinformatics Core1
- Christophe Antoniewski1
- Clea Siguret1
- Computational Genomics with R1
- Computational Metagenomics1
- Cornell University1
- Dipannita Ghosh1
- Egon Willighagen1
- Eija Korpelainen1
- Ellen McDonagh1
- Eric C. Anderson1
- Erik Hjerde1
- Espen Aberg1
- Espen Mikal Robertsen1
- Espen Åberg1
- Federico Bianchini1
- Fred Hutch Data Science Lab1
- Friederike Ehrhart1
- Functional Genomics Laboratory1
- Galaxy Project1
- Illimar Rekand1
- Jan Paces1
- Jio Institute1
- Johann Confais1
- Jonathan Mélius1
- Jordi Rambla1
- Juha Tornroos1
- Katharina Hoff1
- Korbinian Bösl1
- Kristyna Kupkova1
- Leonardo Collado-Torres1
- Maria Lehtivaara1
- Mateo Boudet1
- Melbourne Bioinformatics1
- Mike Lee1
- Monique Zahn1
- NASA Ames Research Center1
- NOAA, Southwest Fisheries Science Center1
- Nathan Dunn1
- Nazeefa Fatima1
- Nils Peder Willassen1
- Nina Overgaard Therkildsen1
- Olivier Inizan1
- Oslo Centre for Biostatistics and Epidemiology1
- Pachter Lab1
- Papenfuss Lab1
- Peter van Heusden1
- Raf Winand1
- Rebecca Foulger1
- SIB Swiss Institute of Bioinformatics1
- Sabela de la Torre1
- St. Jude Children's Research Hospital1
- Stephen Turner1
- Steven M. Van Belleghem1
- Teaching materials at the Harvard Chan Bioinformatics Core1
- The Griffith Lab1
- The McDonnell Genome Institute1
- Thoba Lose1
- Universität Greifswald1
- VU Amsterdam1
- Wellcome Connecting Science1
- bioinformatics.ca1
- cambiotraining1
- genomicsclass1
- liulab-dfci1
- nullranges1
- rapidspeciation1
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- Contributor
- Helena Rasche16
- Saskia Hiltemann16
- Björn Grüning15
- Bérénice Batut15
- Anthony Bretaudeau11
- Data Carpentry6
- Niall Beard5
- Nicola Soranzo5
- Anton Nekrutenko4
- Peter van Heusden4
- Bazante Sanders3
- Canadian Bioinformatics Workshops3
- Cristóbal Gallardo3
- Maria Doyle3
- Miaomiao Zhou3
- NBIS - National Bioinformatics Infrastructure Sweden3
- Teresa Müller3
- Wolfgang Maier3
- Bioinformatics, Rockefeller University2
- Christoph Stritt2
- Clea Siguret2
- Deepti Varshney2
- Delphine Lariviere2
- Emma Barnes2
- Gildas Le Corguillé2
- Instituto Gulbenkian de Ciência2
- James Chong2
- Mélanie Petera2
- Nate Coraor2
- Simon Gladman2
- Software Sustainability Institute2
- The Carpentries Lab2
- The Gulbenkian Training Programme in Bioinformatics2
- University of York2
- William Durand2
- pimarin2
- @LieberInstitute1
- @formbio1
- Alex Ostrovsky1
- Alli Black1
- Andries Marees1
- Anna Syme1
- Applied Genomics1
- CRUK CI Bioinformatics Core1
- Christophe Antoniewski1
- Computational Genomics with R1
- Computational Metagenomics1
- Cornell University1
- Dipannita Ghosh1
- Donny Vrins1
- Eija Korpelainen1
- Enis Afgan1
- Eric C. Anderson1
- Erik Hjerde1
- Espen Aberg1
- Espen Mikal Robertsen1
- Fred Hutch Data Science Lab1
- Functional Genomics Laboratory1
- Galaxy Project1
- Galo A. Goig1
- INRAE1
- Jennifer Hillman-Jackson1
- Jio Institute1
- Jordi Rambla1
- Juha Tornroos1
- Katharina Hoff1
- Kristyna Kupkova1
- Leonardo Collado-Torres1
- Linelle Abueg1
- Lucille Delisle1
- Maria Lehtivaara1
- Matúš Kalaš1
- Melbourne Bioinformatics1
- Mike Lee1
- NASA Ames Research Center1
- NOAA, Southwest Fisheries Science Center1
- Nils Peder Willassen1
- Nina Overgaard Therkildsen1
- Olivier Inizan1
- Oslo Centre for Biostatistics and Epidemiology1
- Pachter Lab1
- Papenfuss Lab1
- Paul Zierep1
- SIB Swiss Institute of Bioinformatics1
- Sabela de la Torre1
- Simon Bray1
- St. Jude Children's Research Hospital1
- Stephen Turner1
- Steven M. Van Belleghem1
- Stéphanie Robin1
- Teaching materials at the Harvard Chan Bioinformatics Core1
- The Griffith Lab1
- The McDonnell Genome Institute1
- Universität Greifswald1
- VU Amsterdam1
- Vijay1
- Wellcome Connecting Science1
- bioinformatics.ca1
- cambiotraining1
- genomicsclass1
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- Resource type
- e-learning22
- Recorded webinar7
- Training materials6
- Slides5
- Video5
- course materials5
- Tutorial4
- Presentation3
- Bioinformatics1
- Installation instructions1
- Manual1
- Online material1
- knowledgebase1
- online course1
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- Related resource
- Associated Training Datasets17
- Associated Workflows17
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Genomics England PanelApp1
- Introduction to the EGA and sharing sensitive data1
- REPET image Docker1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
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- Node
- Switzerland53
- EMBL-EBI10
- Slovenia4
- Spain3
- Czech Republic2
- Finland2
- France2
- Netherlands2
- Norway2
- Belgium1
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- Collection
- ELIXIR Federated Human Data Community2
- VEIS - Value of the EGA for Industry and Society2
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- Status
- Active7
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