Training materials
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e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis Pathogens detection Phylogenetic tree cyoa microgalaxy -
e-learning
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Clinical Metaproteomics 5: Data Interpretation
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Clinical Metaproteomics 3: Verification
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Clinical Metaproteomics 4: Quantitation
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Clinical Metaproteomics 2: Discovery
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Clinical Metaproteiomics 1: Database-Generation
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Binning of metagenomic sequencing data
• beginnerMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
e-learning
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy