e-Learning
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e-learning
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
e-learning
Teaching Python
• beginnerContributing to the Galaxy Training Material -
e-learning
Python - Type annotations
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Python - Multiprocessing
••• advancedSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Python - Testing
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
Python - Subprocess
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Python - Globbing
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Python - Argparse
•• intermediateSoftware engineering Foundations of Data Science