TeSS (Training eSupport System)

Training materials

Target audience: Students

and Difficulty level: Beginner

and Contributors: Saskia Hiltemann

19 materials found

e-learning

Filter, plot, and explore single cell RNA-seq data with Seurat (R)

• beginner
10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook
e-learning

Data visualisation Olympics - Visualization in R

• beginner
Software engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook
e-learning

Identification of AMR genes in an assembled bacterial genome

• beginner
Whole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health
e-learning

RNA-seq Alignment with STAR

• beginner
Transcriptomics
e-learning

Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

• beginner
Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore
e-learning

Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

• beginner
Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
e-learning

De Bruijn Graph Assembly

• beginner
Sequence assembly Assembly
hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial

• beginner
Metagenomics metagenomics metatranscriptomics
hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial

• beginner
Metagenomics metagenomics metatranscriptomics
e-learning

Variant Calling Workflow

• beginner
Software engineering Foundations of Data Science

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Training materials

Filter, plot, and explore single cell RNA-seq data with Seurat (R)

Data visualisation Olympics - Visualization in R

Identification of AMR genes in an assembled bacterial genome

RNA-seq Alignment with STAR

Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

De Bruijn Graph Assembly

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial

Variant Calling Workflow