Training materials
Difficulty level: Beginner
and Scientific topics: Transcriptomics
and Contributors: Pavankumar Videm
11 materials found
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slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics -
e-learning
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication -
e-learning
Combining single cell datasets after pre-processing
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication -
e-learning
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x MIGHTS Python Single Cell jupyter-notebook paper-replication -
e-learning
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics miRNA plants stress tolerance -
e-learning
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
e-learning
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics 10x Single Cell -
e-learning
Small Non-coding RNA Clustering using BlockClust
• beginnerTranscriptomics -
e-learning
Generating a single cell matrix using Alevin
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication
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