Training materials
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e-learning
Evaluating and ranking a set of pathways based on multiple metrics
• beginnerSynthetic biology Synthetic Biology -
e-learning
Long non-coding RNAs (lncRNAs) annotation with FEELnc
•• intermediateGenome Annotation eukaryote -
e-learning
Upload data to Galaxy
• beginnerIntroduction to Galaxy Analyses -
e-learning
Combining single cell datasets after pre-processing
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication -
e-learning
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x MIGHTS Python Single Cell jupyter-notebook paper-replication -
e-learning
Comparative gene analysis in unannotated genomes
• beginnerGenomics Gene and protein families Sequence analysis Phylogeny Genome Annotation annotation cookbook eukaryote evolution microgalaxy prokaryote vgp -
e-learning
Genome Assembly Quality Control
•• intermediateSequence assembly Assembly assembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
e-learning
Refining Genome Annotations with Apollo (eukaryotes)
•• intermediateGenome Annotation apollo2 cyoa eukaryote gmod jbrowse1 -
e-learning
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology