Training materials
Keywords: Automation, Galaxy workflows, command line
and Content provider: BY-COVID
and Difficulty level: Not specified
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Keyword
- Automation, Galaxy workflows, command line
- FAIR13
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- Galaxy, Accelerating Research, data sharing1
- Galaxy, Build, pathogen surveillance system, automated, automation, SARS-CoV-2, genome surveillance, system1
- Galaxy, Building, pathogen surveillance system, Automating, automation, workflows, command line1
- Galaxy, Building, pathogen surveillance system, Removal,human reads, SARS-CoV-2, sequencing data1
- Galaxy, Building, pathogen surveillance system, Upload data, ENA1
- Galaxy, Building, pathogen surveillance system, usegalaxy, SARS-CoV-2, Bot1
- Galaxy, Case Studies, SARS-COV-2 data1
- Galaxy, Customising, customise, ObservableHQ1
- Galaxy, FAIR data, data provenance, RO-Crate, Publishing1
- Galaxy, FAIR data, data provenance, RO-Crate, Publishing Workflow, GitHub repositories1
- Galaxy, FAIR data, data provenance, RO-Crate, Publishing Workflow, Submitting workflows, LifeMonitor1
- Galaxy, FAIR data, data provenance, RO-Crate, Publishing, Workflow, Registering, WorkflowHub1
- Galaxy, FAIR data, data provenance, RO-Crate, Python1
- Galaxy, FAIR data, data provenance, RO-Crate, RO-Crate concept, RO-Crate implementations1
- Galaxy, FAIR data, data provenance, RO-Crate, Workflow Run, RO-Crate Introduction1
- Galaxy, Mutation calling, viral genome reconstruction, lineage assignment, clade assignment, SARS-CoV-2 sequencing data1
- Galaxy, NGS1
- Galaxy, Pandemics Research, Mass Spectrometry, MS1
- Galaxy, Quality control, QC1
- Galaxy, Removal, human reads, SARS-CoV-2 sequencing data1
- Galaxy, Scripting, coding, Galaxy, API, BioBlend1
- Galaxy, Sequencing data analysis, spectrum, viral genomes1
- Galaxy, Tuberculosis Sequence Analysis, Concepts, drug-resistance, prediction, mutation-based, clustering1
- Galaxy, Tuberculosis Sequence Analysis, Identifying, tuberculosis transmission, links, SNPs, transmission clusters1
- Galaxy, Tuberculosis Sequence Analysis, Implementation, NGS, TB- WHO, documents, considerations1
- Galaxy, Tuberculosis Sequence Analysis, Tuberculosis, Variant Analysis1
- Galaxy, Tuberculosis Sequence Analysis, phylogenetics1
- Galaxy, Unicycler, assembly, SARS-CoV-2 genome, preprocessing, remove, clean, human genome reads1
- Galaxy, Upload data, ENA1
- Galaxy, Viral Pathogen Analysis, Avian influenza, viral strain, data analysis, gene segment, sequencing data1
- Galaxy, Viral Pathogen Analysis, NCBI, Sequence Read Archive, SRA, SARS-CoV-2, variant analysis1
- Galaxy, Viral Pathogen Analysis, Pox virus, genome analysis, tiled-amplicon, sequencing data1
- Galaxy, build, pathogen surveillance system, Mutation calling, viral genome, reconstruction, lineage/clade assignment, SARS-CoV-2, sequencing data1
- Galaxy, data collection1
- Galaxy, mapping1
- Galaxy, usegalaxy, SARS-CoV-2 Bot1
- Galaxy, viral Beacon1
- Hackathons1
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- Molecular biology1
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- SARS-CoV-2, Monitoring, Analysis, Galaxy1
- SRA Aligned, read format, Galaxy1
- Socioeconomic data1
- Submitting1
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- analysis1
- clade assignment1
- gene segment sequencing data1
- genome analysis1
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