Training materials
Scientific topics: Software engineering
and Authors: The Carpentries
and Contributors: Anthony Bretaudeau
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e-learning
Variant Calling Workflow
• beginnerSoftware engineering Foundations of Data Science -
e-learning
SQL with Python
•• intermediateSoftware engineering Foundations of Data Science Python SQL jupyter-notebook -
e-learning
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook -
e-learning
Advanced CLI in Galaxy
•• intermediateSoftware engineering Foundations of Data Science bash jupyter-notebook -
e-learning
Plotting in Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
e-learning
Advanced SQL
• beginnerSoftware engineering Foundations of Data Science SQL jupyter-notebook -
e-learning
Introduction to SQL
• beginnerSoftware engineering Foundations of Data Science SQL jupyter-notebook -
e-learning
Advanced R in Galaxy
•• intermediateSoftware engineering Foundations of Data Science R -
e-learning
R basics in Galaxy
• beginnerSoftware engineering Foundations of Data Science R interactive-tools
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