TeSS (Training eSupport System)

Training materials

Contributors: Saskia Hiltemann

and Target audience: Students

and Authors: Bérénice Batut

10 materials found

e-learning

Identification of AMR genes in an assembled bacterial genome

• beginner
Whole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health
e-learning

Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

• beginner
Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore
e-learning

Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

• beginner
Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial

• beginner
Metagenomics metagenomics metatranscriptomics
hands-on tutorial

Hands-on for '16S Microbial Analysis with mothur (extended)' tutorial

metagenomics
hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial

• beginner
Metagenomics metagenomics metatranscriptomics
hands-on tutorial

Hands-on for 'Analyses of metagenomics data - The global picture' tutorial

metagenomics
hands-on tutorial

Hands-on for '16S Microbial Analysis with mothur (short)' tutorial

metagenomics
slides

Introduction to 'Metagenomics'

Metagenomics
slides

Introduction to 'Introduction to Galaxy Analyses'

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Training materials

Identification of AMR genes in an assembled bacterial genome

Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial

Hands-on for '16S Microbial Analysis with mothur (extended)' tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial

Hands-on for 'Analyses of metagenomics data - The global picture' tutorial

Hands-on for '16S Microbial Analysis with mothur (short)' tutorial

Introduction to 'Metagenomics'

Introduction to 'Introduction to Galaxy Analyses'