e-learning

RNA Seq Counts to Viz in R

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Abstract

This tutorial will show you how to visualise RNA Sequencing Counts with R

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • How can I create neat visualizations of the data?

Learning Objectives

  • Describe the role of data, aesthetics, geoms, and layers in ggplot functions.
  • Customize plot scales, titles, subtitles, themes, fonts, layout, and orientation.

Licence: Creative Commons Attribution 4.0 International

Keywords: Transcriptomics, interactive-tools

Target audience: Students

Resource type: e-learning

Version: 21

Status: Active

Prerequisites:

  • Advanced R in Galaxy
  • Introduction to Galaxy Analyses
  • Mapping
  • Quality Control
  • R basics in Galaxy
  • RStudio in Galaxy
  • Reference-based RNA-Seq data analysis

Learning objectives:

  • Describe the role of data, aesthetics, geoms, and layers in ggplot functions.
  • Customize plot scales, titles, subtitles, themes, fonts, layout, and orientation.

Date modified: 2024-10-15

Date published: 2019-10-08

Authors: Bérénice Batut, Fotis E. Psomopoulos, Toby Hodges

Contributors: Bérénice Batut, Erasmus+ Programme, Fotis E. Psomopoulos, Toby Hodges

Scientific topics: Transcriptomics

External resources:
Associated Training Datasets
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