e-learning
Making sense of a newly assembled genome
Abstract
In this tutorial we begin with a new genome assembly just produced in the Unicycler tutorial. This is an assembly of E. coli C, which we will be comparing to assemblies of all other complete genes of this species.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- I just assembled a genome. How does it compare with already sequenced genomes?
- How do I find rearranged, inserted, or deleted regions?
Learning Objectives
- Identification of the most closely related genome to my new assembly
- Perform sequence comparison to locate rearrangements
- Identify genes located in deletions
Licence: Creative Commons Attribution 4.0 International
Keywords: Assembly, gmod, jbrowse1, microgalaxy, prokaryote
Target audience: Students
Resource type: e-learning
Version: 29
Status: Active
Prerequisites:
- Introduction to Galaxy Analyses
- Quality Control
- Unicycler Assembly
Learning objectives:
- Identification of the most closely related genome to my new assembly
- Perform sequence comparison to locate rearrangements
- Identify genes located in deletions
Date modified: 2024-06-24
Date published: 2018-06-14
Contributors: Anton Nekrutenko, Delphine Lariviere, Helena Rasche
Scientific topics: Sequence assembly, Genomics, Microbiology
Activity log
