e-learning
Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools
Abstract
Galaxy-SynBioCAD portal is the first toolshed for synthetic biology, metabolic engineering, and industrial biotechnology. It provides a set of Retrosynthesis tools aimed at finding pathways to synthesize heterologous compounds in chassis organisms (RetroRules, RetroPath2.0, RP2Paths, rpCompletion).
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- Which heterologous pathways are candidates to produce a compound in a chassis?
Learning Objectives
- Define what data are required to run RetroSynthesis analysis.
- Understanding how to run the tools to search heterologous pathways.
Licence: Creative Commons Attribution 4.0 International
Keywords: Synthetic Biology
Target audience: Students
Resource type: e-learning
Version: 8
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Define what data are required to run RetroSynthesis analysis.
- Understanding how to run the tools to search heterologous pathways.
Date modified: 2024-06-14
Date published: 2022-06-23
Contributors: Guillaume Gricourt, Ioana Popescu, Jean-Loup Faulon, Joan Hérisson, Kenza Bazi-Kabbaj, Thomas Duigou
Scientific topics: Synthetic biology
Activity log
