e-learning
Compute and analyze biodiversity metrics with PAMPA toolsuite
Abstract
This tutorial aims to present the PAMPA Galaxy workflow, how to use it to compute common
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How to evaluate properly populations and communities biological state with abundance data?
- How does trawl exploited populations of Baltic sea, Southern Atlantic and Scotland are doing over time?
- How to compute and analyze biodiversity metrics from abundance data?
Learning Objectives
- Upload data from DATRAS portal of ICES
- Pre-process population data with Galaxy
- Learning how to use an ecological analysis workflow from raw data to graphical representations
- Learning how to construct a Generalized Linear (Mixed) Model from a usual ecological question
- Learning how to interpret a Generalized Linear (Mixed) Model
Licence: Creative Commons Attribution 4.0 International
Keywords: Community composition EBV class, EBV dataset, EBV workflow, Ecology, Species population EBV class, modeling
Target audience: Students
Resource type: e-learning
Version: 21
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Upload data from DATRAS portal of ICES
- Pre-process population data with Galaxy
- Learning how to use an ecological analysis workflow from raw data to graphical representations
- Learning how to construct a Generalized Linear (Mixed) Model from a usual ecological question
- Learning how to interpret a Generalized Linear (Mixed) Model
Date modified: 2024-06-27
Date published: 2020-11-19
Contributors: Coline Royaux, Jean-Baptiste Mihoub, Yvan Le Bras
Scientific topics: Ecology
External resources:
Activity log
