Chip-seq: Peak calling tutorial

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The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research infrastructure, ELIXIR.

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Chip-seq: Peak calling tutorial

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The aim is to :
Understand how to process reads to obtain peaks (peak-calling).
Become familiar with differential analysis of peaks
In practice :
Obtain dataset from GEO
Analyze mapped reads
Obtain set(s) of peaks, handle replicates
Differential analysis of peak

Keywords: Chip-seq, NGS, Peak calling

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